diff --git a/src/flattool b/src/flattool
deleted file mode 100755
index 99b6aa9..0000000
--- a/src/flattool
+++ /dev/null
@@ -1,584 +0,0 @@
-#!/usr/bin/env bash
-# SPDX-License-Identifier: GPL-3.0-only
-
-# Settings and stuff, 'as' stands for App Setting. LastUpdateCheck must be 10 digits
-asFirstRun="false"
-asLastUpdateCheck="1692473972"
-asAutoCheckUpdate="true"
-
-# Global variables
-versionNumber="1.4.2"
-owner="heliguy4599"
-repo="flattool"
-appID=''
-boldTxt=$(tput bold)
-normalTxt=$(tput sgr0)
-errTxt=$(tput setaf 1 && tput bold)
-flatpak="flatpak-spawn --host flatpak"
-
-# Haha, April Fools nerd
-if [ "$(date +%m%d)" -eq 0401 ]; then
-    echo "Haha, April 1st, get ejected"
-    eject
-fi
-
-# Functions to save time programming this
-# ====================================================================================
-# Function to make printing error message easier
-printerr() {
-    echo -e "${errTxt}error: ${normalTxt}${1}\n"
-
-    # If a second argument is supplied, print 2 new lines and then it
-    if [ $# -eq 2 ]; then
-        echo "$2"
-    fi
-}
-
-# Check for any new versions
-checkForNewVersion() {
-    currentTime=$(date +%s)
-    if ((currentTime - asLastUpdateCheck < 3600)); then
-        return 2
-    fi
-    sed -E -i "s/^asLastUpdateCheck=\"[0-9]{10}\"$/asLastUpdateCheck=\"${currentTime}\"/" "$0"
-    latestRelease=$(curl -s "https://api.github.com/repos/$owner/$repo/releases/latest")
-    latestTag=$(echo "$latestRelease" | grep -o '"tag_name": "[^"]*' | cut -d'"' -f4 | head -n1)
-    if [ "$latestTag" = "$versionNumber" ]; then
-        return 0
-    else
-        return 1
-    fi
-}
-
-# Get explicit consent function
-userConsent() {
-    prompt=$1
-    echo -n "$prompt" "[y|N]: "
-    read -r answer
-    case "$answer" in
-        [Yy])
-            echo "Continuing..."
-            return 0
-            ;;
-        *)
-            echo "Aborted"
-            exit 1
-            ;;
-    esac
-}
-
-# Information printing function
-printinfo() {
-    echo -e "  Version\t" "$versionNumber"
-    checkForNewVersion
-    if [ $? -eq 1 ]; then
-        echo -e "  New Version \t" "$latestTag"
-    fi
-    echo -e "  Location\t" "$0"
-}
-
-# Function to easily check that the command called has the right amount of arguments
-checkArgLength() {
-    minLength=$1
-    maxLength=$2
-
-    # Check to make sure that this is being called with the right options, a -1 in the second spot = unlimted
-    if [ "$minLength" -lt 0 ] || { [ "$minLength" -gt "$maxLength" ] && [ "$maxLength" -ge 0 ]; }; then
-        printerr "Internal program error: checkArgLength called with improper min or max values\n$0"
-        exit 1
-    fi
-
-    # Check for proper argument amount
-    shift 3
-    if [ $# -lt "$minLength" ] || { [ "$maxLength" -ge 0 ] && [ $# -gt "$maxLength" ]; }; then
-        printSubcommandHelp "$subcommand"
-        exit 1
-    fi
-}
-
-trashFile() {
-    if command -v trash-put >/dev/null 2>&1; then
-        trash-put "$1"
-        return
-    fi
-    if command -v gio >/dev/null 2>&1; then
-        gio trash "$1"
-        return
-    fi
-    rm -rf "$1"
-    return
-}
-# ====================================================================================
-
-printMasterHelp() {
-    echo -e "Usage: flattool <command>"
-    printinfo
-    echo -e "\nCommands:"
-
-    printSubcommandHelp "install"
-    printSubcommandHelp "uninstall"
-    printSubcommandHelp "purge"
-    printSubcommandHelp "search"
-    printSubcommandHelp "id"
-    printSubcommandHelp "run"
-    printSubcommandHelp "orphans"
-    printSubcommandHelp "export"
-    printSubcommandHelp "data-dir"
-    printSubcommandHelp "add-flathub"
-    printSubcommandHelp "version"
-    printSubcommandHelp "auto-update"
-    printSubcommandHelp "update-check"
-    printSubcommandHelp "help"
-}
-
-printSubcommandHelp() {
-    case $1 in
-        install)
-            echo "  install - usage: flattool install <app-query> <app-query> <app-query> ..."
-            echo -e "    can also be ran with '-i'"
-            echo -e "    about: Installs one or more ${flatpak} apps with separate processes to avoid cancelling the queue if a name cannot be matched\n"
-            ;;
-        uninstall)
-            echo -e "  uninstall - usage: flattool uninstall <app-query> <app-query> <app-query> ..."
-            echo -e "    can also be ran with '-u', 'remove', 'rm'"
-            echo -e "    about: Uninstalls one or more ${flatpak} apps with separate processes to avoid cancelling the queue if a name cannot be matched\n"
-            ;;
-        purge)
-            echo -e "  purge - usage: flattool purge <app-query>"
-            echo -e "    can also be ran with '-p'"
-            echo -e "    about: Uninstalls a ${flatpak} app and deletes its user data folder\n"
-            ;;
-        search)
-            echo -e "  search - usage: flattool search <app-query>"
-            echo -e "    can also be ran with '-s'"
-            echo -e "    about: Searches installed ${flatpak}s and returns lines from '${flatpak} list' that match the query\n"
-            ;;
-        id)
-            echo -e "  id - usage: flattool id <app-query> <app-query> <app-query> ..."
-            echo -e "    about: Returns the first matching Application ID for the query\n"
-            ;;
-        run)
-            echo -e "  run - usage: flattool run <app-query>"
-            echo -e "    can also be ran with '-r'"
-            echo -e "    about: Runs the first matching application for the query, not requiring the full Application ID. Passes any extra arguments to the app to run except '--help' and '-h'\n"
-            ;;
-        orphans)
-            echo -e "  orphans - usage: flattool orphans"
-            echo -e "    can also be ran with '-o'"
-            echo -e "    about: Looks through ~/.var/app (the user data folder) and finds all folders that do not have corrosponding installed ${flatpak}s, then prompts asks user what to do with them\n"
-            ;;
-        export)
-            echo -e "  export - usage: flattool export"
-            echo -e "    can also be ran with '-e'"
-            echo -e "    about: Returns '${flatpak} install <all installed ${flatpak} application IDs>' so that you can copy and paste this to a new machine to install all your ${flatpak}s\n"
-            ;;
-        data-dir)
-            echo -e "  data-dir - usage: flattool data-dir <app query>"
-            echo -e "    can also be ran with '-d'"
-            echo -e "    about: Displays the path to the user data directory of the first matching ${flatpak}, adding '--open' or '-o' at the end will open the path\n"
-            ;;
-        add-flathub)
-            echo -e "  add-flathub - usage: flattool add-flathub <user,system>"
-            echo -e "    about: Adds the flathub remoted repository flathub to either the system install or user install depending on the option chosen\n"
-            ;;
-        version)
-            echo -e "  version - usage: flattool version"
-            echo -e "    can also be ran with '-v', '--version'"
-            echo -e "    about: Prints the currently running version of flattool and where flattool is running from\n"
-            ;;
-        auto-update)
-            echo -e "  auto-update - usage: flattool auto-update"
-            echo -e "    about: Toggles whether flattool will check for updates on each run\n"
-            ;;
-        update-check)
-            echo -e "  update-check: flattool update-check"
-            echo -e "    about: Checks github to see if there is a new release and if there is, prompts to install it. Can only check once an hour.\n"
-            ;;
-        help)
-            echo -e "  help - usage: flattool help"
-            echo -e "    can also be ran with '-h', '--help'"
-            echo -e "    about: Prints the full help message for flattool"
-            ;;
-    esac
-}
-
-# Main functions for the app
-# ====================================================================================
-identifyByQuery() {
-    app=$(${flatpak} list | awk -v app="${1,,}" -F '\t' 'tolower($0) ~ app { print $2 }' | head -n 1)
-    if [ -z "$app" ]; then
-        printerr "No Application ID found from query: '${boldTxt}${1}${normalTxt}'"
-        exit 1
-    fi
-    appID=$app
-}
-
-searchApp() {
-    output=$(${flatpak} list | grep -i "$1")
-    if [ -z "$output" ]; then
-        printerr "No installed application found from query: '${boldTxt}${1}${normalTxt}'"
-        exit 1
-    fi
-    echo "$output"
-}
-
-installApp() {
-    # Do multiple ${flatpak} installs for multiple apps
-    while [ $# -gt 0 ]; do
-        ${flatpak} install "$1"
-        echo
-        if [ $# -gt 0 ]; then
-		echo "${boldTxt}$(($# - 1)) Flatpaks to go${normalTxt}"
-        fi
-        shift
-    done
-}
-
-removeApp() {
-    # Do multiple ${flatpak} removes for multiple apps
-    while [ $# -gt 0 ]; do
-        ${flatpak} remove "$1"
-        echo
-        if [ $# -gt 0 ]; then
-		echo "${boldTxt}$(($# - 1)) Flatpaks to go${normalTxt}"
-        fi
-        shift
-    done
-}
-
-purgeApp() {
-    identifyByQuery "$1"
-    userConsent "Are you sure you want to uninstall ${boldTxt}${appID}${normalTxt} and delete its user data?"
-    ${flatpak} uninstall "$appID"
-    trashFile "${HOME}/.var/app/${appID}"
-}
-
-fixOrphans() {
-    echo "Checking '~/.var/app' for orphaned folders..."
-    appsList="$(${flatpak} list)"
-    orphanedAppsList=()
-    for element in "$HOME/.var/app/"*; do
-        element=$(basename "$element")
-        foundApp=$(grep -i "$element" <<< "$appsList")
-        if [ -z "$foundApp" ]; then
-            orphanedAppsList+=( "$element" )
-        fi
-    done
-
-    if [ -n "${orphanedAppsList[0]}" ]; then #check for if the first element is empty, which will indicate if there is no orphaned apps
-        echo -e "\nThese user data folders exist with no installed ${flatpak}s:"
-        for element in "${orphanedAppsList[@]}"; do
-            echo "  $element"
-        done
-        echo
-
-        echo "What would you like to do with these folders?"
-        echo "  1) Attempt to install matching ${flatpak}s"
-        echo "  2) Delete these folders"
-
-        totalOfOrphans=${#orphanedAppsList[@]}
-        maxChoices=2
-        if [ "$totalOfOrphans" -gt 1 ]; then
-            echo "  3) Decide for each folder individually"
-            maxChoices=3
-        fi
-
-        echo -en "\nWhich option do you want to use (0 to abort)? [0-${maxChoices}]: "
-        while true; do
-            read -r answer
-            if ! [ "$answer" -eq "$answer" ] 2>/dev/null || [ "$answer" -lt 0 ] || [ "$answer" -gt "$maxChoices" ]; then
-                echo -n "Which option do you want to use (0 to abort)? [0-${maxChoices}]: "
-            else
-                break
-            fi
-        done
-
-        case "$answer" in
-            1)
-                echo "Attempting to install..."
-                installApp "${orphanedAppsList[@]}"
-                ;;
-            2)
-                echo "Deleting..."
-                for element in "${orphanedAppsList[@]}"; do
-                    trashFile "${HOME}/.var/app/${element}"
-                done
-                ;;
-            3)
-            	numberOfRound=$totalOfOrphans
-                for element in "${orphanedAppsList[@]}"; do
-                    numberOfRound=$((numberOfRound - 1))
-        	        echo -e "${boldTxt}${numberOfRound} Flatpaks to go${normalTxt}\n"
-                    echo "For folder '${element}', choose an option"
-                    echo -n "[T]rash, [I]install, or [S]kip: "
-                    while true; do
-                        read -r answer
-                        case "$answer" in
-                            [Tt])
-                                echo "Deleting..."
-                                trashFile "${HOME}/.var/app/${element}"
-                                break
-                                ;;
-                            [Ii])
-                                echo "Attempting to install"
-                                installApp "$element"
-                                break
-                                ;;
-                            [Ss])
-                                echo "Skipping"
-                                break
-                                ;;
-                            *)
-                                echo -n "[T]rash, [I]install, or [S]kip: "
-                                ;;
-                        esac
-                    done
-                done
-                ;;
-            *)
-                echo "Aborted"
-                ;;
-        esac
-    else
-        echo "There are no orphaned user data folders"
-    fi
-
-}
-
-flathub-add() {
-    case "$1" in
-        user | -u | --user)
-            ${flatpak} remote-add --if-not-exists flathub https://dl.flathub.org/repo/flathub.${flatpak}repo --user
-            ;;
-        system | -s | --system)
-            ${flatpak} remote-add --if-not-exists flathub https://dl.flathub.org/repo/flathub.${flatpak}repo
-            ;;
-        *)
-            printerr "'${1}' is not an option" "Please specify either 'user' or 'system'"
-            ;;
-    esac
-}
-# ====================================================================================
-
-# <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-# <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-# <><><><><><><><><><><=[ B E G I N   M A I N   P R O G R A M ]=<><><><><><><><><><><>
-# <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-# <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-
-if [ "$asFirstRun" == "true" ]; then
-    sed -i 's/^asFirstRun="true"$/asFirstRun="false"/' "$0"
-    echo -e "Thank you for using flattool! This is the first time its being ran. Make sure to run 'flattool --help' if you are unsure of how to use this.\n"
-
-    # Check which trashing methods, if any, are avaialable
-    if command -v trash-put >/dev/null 2>&1; then
-        echo -e "Trashing Method: trash-cli"
-        echo -e "  All deleted files will be sent to your trash"
-    else
-        if command -v gio >/dev/null 2>&1; then
-            echo -e "Trashing Method: gio"
-            echo -e "  All deleted files will be sent to your trash"
-        else
-            echo -e "Trashing Method: Sadly flattool found no supported method for trashing your files. And deleted data will be ${boldTxt}perminantly deleted${normalTxt}."
-            echo -e "  To allow flattool to send items to your trash instead, please install trash-cli or gio."
-        fi
-    fi
-    echo # For a nice newline
-
-    echo -e "Flattool can check for updates, these checks will occur on every run, so long as it has been an hour since the last check."
-    echo -e "  To install an update, run 'flattool update-check'.\n"
-    echo -n "Do you want to enable auto update checking? (You can change your mind later with 'flattool auto-update') [Y|n]: "
-    read -r answer
-    case $answer in
-        [Nn])
-            sed -i 's/^asAutoCheckUpdate="true"$/asAutoCheckUpdate="false"/' "$0"
-            ;;
-        *)
-            sed -i 's/^asAutoCheckUpdate="false"$/asAutoCheckUpdate="true"/' "$0"
-            ;;
-    esac
-    echo # For a nice newline
-
-    # Adding flathub if its not found
-    hasFlathub=$(${flatpak} remotes | grep flathub)
-    if [ -z "$hasFlathub" ]; then
-        answer=""
-        while [ -z "$answer" ]; do
-            echo -n "The flathub remote has not been found, would you like to add it as a [U]ser remote, [S]ystem remote, or [I]gnore: "
-            read -r answer
-            case $answer in
-                [Uu])
-                    flathub-add user
-                    ;;
-                [Ss])
-                    flathub-add system
-                    ;;
-                [Ii])
-                    echo -e "You can add flathub any time later with 'flattool add-flathub'"
-                    ;;
-                *)
-                    answer="" # Clear the answer variable so the loop runs again
-                    ;;
-            esac
-        done
-        echo # For a nice newline
-    fi
-fi
-
-# Setting the subcommand
-subcommand=$1
-
-if [ "$asAutoCheckUpdate" == "true" ] && [ "$subcommand" != "update-check" ] && [ "$subcommand" != "auto-update" ]; then
-    checkForNewVersion
-    if [ $? -eq 1 ]; then
-        echo "New version of flattool is available: ${latestTag}"
-    fi
-fi
-
-# Check if any subcommand is provided
-if [ $# -eq 0 ]; then
-    printerr "No command specified" "See 'flattool --help'"
-    exit 1
-fi
-
-# Expand flags and aliases
-case $subcommand in
-    -h)
-        subcommand="help"
-        ;;
-    -i)
-        subcommand="install"
-        ;;
-    -u | rm | remove)
-        subcommand="uninstall"
-        ;;
-    -r)
-        subcommand="run"
-        ;;
-    -p)
-        subcommand="purge"
-        ;;
-    -o)
-        subcommand="orphans"
-        ;;
-    -e)
-        subcommand="export"
-        ;;
-    -s)
-        subcommand="search"
-        ;;
-    -d)
-        subcommand="data-dir"
-        ;;
-    -v | --version)
-        subcommand="version"
-        ;;
-esac
-
-# Calling the correct subcommand help responses
-if [ "$#" -gt 0 ] && [ "${*:$#}" == "-h" ] || [ "${*:$#}" == "--help" ]; then
-    if [ "$#" -eq 1 ]; then
-        printMasterHelp
-        exit 0
-    fi
-    printSubcommandHelp "$subcommand"
-    exit 0
-fi
-
-# Switch case to run the proper function per subcommand
-case "$subcommand" in
-    id)
-        checkArgLength 1 -1 "$@"
-        shift
-        while [ $# -gt 0 ]; do
-            identifyByQuery "$1"
-            echo "$appID"
-            shift
-        done
-        ;;
-    run)
-        checkArgLength 1 -1 "$@"
-        if [ "$2" = "-m" ] || [ "$2" = "--multiple" ]; then
-            shift 2
-            while [ $# -gt 0 ]; do
-                identifyByQuery "$1"
-                ${flatpak} run "$appID" & disown
-                shift
-            done
-            exit
-        fi
-        identifyByQuery "$2"
-        shift 2
-        ${flatpak} run "$appID" "$@"
-        ;;
-    install)
-        checkArgLength 1 -1 "$@"
-        shift
-        installApp "$@"
-        ;;
-    uninstall)
-        checkArgLength 1 -1 "$@"
-        shift
-        removeApp "$@"
-        ;;
-    purge)
-        purgeApp "$2"
-        ;;
-    search)
-        searchApp "$2"
-        ;;
-    orphans)
-        fixOrphans
-        ;;
-    export)
-        checkArgLength 0 0 "$@"
-        echo ${flatpak} install "$(${flatpak} list --columns=application | tr '\n' ' ')"
-        ;;
-    data-dir)
-        checkArgLength 1 2 "$@"
-        identifyByQuery "$2"
-        echo "${HOME}/.var/app/${appID}"
-        if [ "$3" == "-o" ] || [ "$3" == "--open" ]; then
-            xdg-open "${HOME}/.var/app/${appID}"
-        fi
-        ;;
-    add-flathub)
-        checkArgLength 1 1 "$@"
-        shift
-        flathub-add "$@"
-        ;;
-    help)
-        printMasterHelp
-        ;;
-    version)
-        printinfo
-        ;;
-    auto-update)
-        if [ "$asAutoCheckUpdate" = "true" ]; then
-            sed -i 's/^asAutoCheckUpdate="true"$/asAutoCheckUpdate="false"/' "$0"
-            echo "flattool will not check for updates on each run. To manually check, run 'flattool update-check'"
-        else
-            sed -i 's/^asAutoCheckUpdate="false"$/asAutoCheckUpdate="true"/' "$0"
-            echo "flattool will check for updates on each run."
-        fi
-        ;;
-    update-check)
-        asLastUpdateCheck="0000000000"
-        checkForNewVersion
-        case $? in
-            0)
-                echo "flattool is up to date"
-                ;;
-            1)
-                echo "New version of flattool is available: ${latestTag}"
-                userConsent "Do you want to install this new update?"
-                echo "Installing new version..."
-                wget -N -P "$(dirname "$0")" "https://raw.githubusercontent.com/${owner}/${repo}/main/flattool"
-                ;;
-        esac
-        exit 0
-        ;;
-    *)
-        printerr "'${subcommand}' is not a flattool command" "See 'flattool --help'"
-        ;;
-esac
diff --git a/src/meson.build b/src/meson.build
index 1977a00..5c8bf6d 100644
--- a/src/meson.build
+++ b/src/meson.build
@@ -36,15 +36,6 @@ configure_file(
   install_mode: 'r-xr--r--'
 )
 
-configure_file(
-  input: 'flattool',
-  output: 'flattool',
-  configuration: conf,
-  install: true,
-  install_dir: get_option('bindir'),
-  install_mode: 'r-xr--r--'
-)
-
 flattool_gui_sources = [
   '__init__.py',
   'main.py',